Friday, June 05, 2015

Friday Water Cooler

What's behind the Wall Street suicide problem? (neweconomicperspectives.org). And:

Why Are Rates of Suicide Soaring Across the Planet? (alternet.org).

Wikileaks is offering a $100K bounty for a complete copy of the top-secret Trans-Pacific Partnership (TPP) trade agreement (reuters.com). This is the trade agreement with terms so controversial, it can't be negotiated in public.

In Canada this week, tobacco companies were ordered to pay $15 billion in damages (cbc.ca). They'll appeal, of course. But they have to pay out $1 billion in the meantime.

The baloney detection kit (brainpickings.org): Carl Sagan's rules for bullshit detection.

United Arab Emirates reportedly planning a Mars mission.
UAE turns to space exploration as oil dries up (bbc.com). UAE is thinking 50 years ahead, to a time when most of its oil will be gone.

Hillary begins to feel the heat (politico.com). "Insiders familiar with the thinking of the Clinton campaign described it as 'frightened' of Sanders — not that he would win the nomination, but that he could damage her with the activist base by challenging her on core progressive positions in debates and making her look like a centrist or corporatist."

The Precariat: The New Dangerous Class (PDF), by Guy Standing, outlines the political dimensions of job crapification, sounding a warning for neo-liberals. Grab the free download while it lasts.

Another great free book: The State of Working America (Economic Policy Institute). Easy to read, with graphs and data showing what has happened to the American economy. (Hint: It ain't pretty.) Read this book and decide for yourself whether the rosy picture of the current economic "recovery" painted by the Fed and others might, in fact, be bullshit.

U.S. millionaires don't feel financially secure (valuewalk.com).

Police misconduct costs billions (huffingtonpost.com).  

Almost 50% of restaurant workers' families in the U.S. (attn.com) are on public assistance of some kind. Taxpayers get the bill when businesses don't pay a proper wage.

Why the U.S. is butting heads with China in the South China Sea (counterpunch.org). Useful for understanding the sabre-rattling.

Working with an Elegant Idea in a Messy and Chaotic World: Thoughts on Real-World Implementation of Basic Income (usbig.net). Small PDF. Big ideas. Many variations now being discussed; some of the newer monikers are "QE for the people" and helicopter money. More on this in a future post.

Join us here every Friday for under-the-radar news of the weird and wonkish!

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Thursday, June 04, 2015

Biology Posts by Yours Truly: A Recap

I've done a number of posts on biological topics over the past three years here. These are a few of them:

The Primordial Nature of Phage Genes
Virus Genes Don't Always Come from the Host
A Virus with a Metabolic Gene
A Virus, a Worm, and a Louse Walk into a Bar
Viral Abduction of Proteins
Nucleus-like Viruses and Their Enzymes
A Surprise in an Algal Virus
How Quickly Did Life Arise on Earth?
Why Do Some Bacteria Have GC-rich DNA?
Bacteria in Hail Stones
A Catalase Conundrum
Strict Anaerobes that Produce Catalase
Genes, Codons, and Purines
Are Some Leprosy Pseudogenes Turned On?
A Stroll on the Beach in 1,000,000,000 B.C.
The GGAGG Reflex
Are Overapping Genes Real?
How Antisense Genes Are Discovered
Bidirectionally Overlapping Genes
Codons and Reverse Complement Codons
The Pathogen's Playbook
Coming to Grips with Pseudogenes
Pseudogenes Are Not Junk DNA
Whooping Cough Genomics
The Most Deadly Pathogen of All Time
Are Dead Genes Still Alive in the Leprosy Bacillus?
Why Do So Many Codons Begin with a Purine?
A Binary Signal in the Second Codon Base
The First Base in a Codon is Usually a Purine
Frameshift Errors in Leprosy Bacterium DNA
Why So Many Helicases?
A Different Approach to Anti-Aging
Thermometer Genes
How Do Bacteria Survive Radiation Damage?
March of the Microbes
A Manganese Catalase Fusion Protein
The Other Catalase
Odd Structures in a Prophage Genome
A Gene Heatmap
A Large Genome with Lots of Structure
Not All Organisms Use Amino Acids the Same Ways
Comparative Genomics Using the Canvas API
Why Mitochondrial DNA is Different
More about Mitochondrial DNA
Strand Asymmetry in Mitochondrial DNA
Highly Expressed Genes: Better-Repaired?
DNA Strand Asymmetry: More Surprises
Do-It-Yourself Phylogenetic Trees
Shedding Light on DNA Strand Asymmetry
DNA Repair 101
An Evolutionary Debate that Misses the Point
Shannon Entropy and DNA
Chiggers, Scrub Tyhpus, and Pseudogenes
Looking for LUCA
Which Direction Does the Gene Point?
The Pseudogene Hall of Fame
More Secrets of the Virus World
Virus Genes Don't Come from Host Genes
Evolution of Prophage Genes
Evolution of Viral Genes vs. Host Genes
How to Build Your Own Phylo Trees with Mega6
Where Do Virus Genes Come From?
Anaerobic Catalases and Codon Pseudodegeneracy
Problems with the Tuberculosis Genome
Making Sense of Antisense
The "Hypothetical Protein" Problem
A JavaScript Tip for Biohackers
Ancient Drug Resistance Genes
Fixing the Genome Annotation Nightmare
Biology's Dirty Little Secret
A Tale of Nematodes, Scarabs, Germs, and Genes
A Strange Codon Symmetry
A Tale of Two Microbes
Deep-Sea Vents: The Mosquito Connection

Almost all of these posts relate to microbial genetics and/or bioinformatics.

I've also written 40 "biological" articles for BigThink, which can be seen here.